Modern metabolic engineering aims to design new microbial strains that produce products with a commercial value at high yield. It relies on the integration of microbial physiology, genetic engineering, systems biology, and computational biology. Since the product-forming metabolic pathway competes for energetic resources with growth processes, growth and product formation are coupled. This coupling complicates the design of product-forming pathways, as it often brings about undesired side effects.
In this project, we aim to reduce this coupling by making the product-forming pathway reliant on its own intracellular energy source. Although this makes the genetic engineering more involved, it uncouples cell growth and product formation.
You will be responsible for the computational prediction of promising genetic-engineering strategies of metabolism, using genome-scale stoichiometric models of metabolism and enzyme-kinetic considerations, and report this to other consortium members who will construct the corresponding microbial strains.
You will be working in a consortium of PhD students and expert supervisors that work on genetic engineering of enzyme activities, genetic engineering of metabolic pathways, and the physiology of genetically-engineered strains.
Your duties
- Carry out computational metabolic engineering studies and advice genetic engineers on novel designs of metabolic networks in S. cerevisiae and E. coli for the uncoupling of growth and product formation with alternative redox factors, using genome-scale stoichiometric modeling methods
- Use enzyme-kinetics considerations and mathematical models to evaluate regulatory consequences of the redesigned metabolisms
- Collaborate with experimentalists working in the same project on genetic-engineering and physiological evaluation of the performance of genetically-engineered strains
- Work on a general theory of the application of alternative redox for biotechnological purposes