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Research
The use of whole-genome-sequencing (WGS) in public health surveillance and outbreak investigation has taken a huge flight in recent years. Currently, WGS is applied routinely as the standard typing method for all foodborne bacteria under surveillance. Among others, these include Salmonella, Campylobacter, Shiga toxin-producing Escherichia coli, Listeria, Shigella and Yersinia. Outbreak detection is performed with clustering algorithms using the WGS data. However, there is a strong need for enhanced data-driven insight in how to define clusters of patients, determine diversity of strains and types (incl. link to clinical outcomes and/or epidemiological characteristics) and the extent to which within host/farm short-term evolution occurs. This should lead to a more evidence-based framework for good practice genomic surveillance.
Tasks
Unique for this position
You will work in a multidisciplinary team of researchers and will profit from their knowledge and experience. You will learn and contribute to joint efforts to further innovate and improve the utilization of WGS data for public health. The integration of genomics into infectious disease surveillance, epidemiology and research is increasingly important. This PhD project is an excellent steppingstone for a career in public health in the Netherlands and internationally. Furthermore, the analytical and research skills within this project are highly transferable to other fields
Fixed-term contract: 48 months.
Naast het salaris ontvang je een Individueel Keuzebudget (IKB). Het IKB bestaat uit geld (16,37% van je bruto jaarsalaris) en tijd. Met het IKB maak jij de keuzes die bij jou passen en kun je een deel van je arbeidsvoorwaarden zelf samenstellen. Je kunt er bijvoorbeeld voor kiezen om een deel van je maandinkomen te laten uitbetalen wanneer jij dat wenst. Ook kun je dit budget omzetten in verlof en andersom of besteden aan fiscaal vriendelijke doelen. De Rijksoverheid hecht sterk aan persoonlijke groei en loopbaanontwikkeling en biedt daarvoor tal van mogelijkheden. Tot de secundaire arbeidsvoorwaarden behoren onder meer verschillende studiefaciliteiten, bedrijfsfitness, volledige vergoeding van je OV-reiskosten woon-werkverkeer en gedeeltelijk betaald ouderschapsverlof.
You will be working within the Centre for Infectious Disease Control (CIb) of the RIVM which has the mission of detecting, combating and preventing infectious diseases for the benefit of public health in the Netherlands. In doing so, the CIb establishes a link between policy, implementation and science, as well as between various r disciplines in the human, animal and environmental health fields nationally and internationally. You will be collaborating with colleagues working in diagnostics, surveillance and risk assessment of foodborne diseases.. You will be appointed in the department of Gastro-Enteric infections and Zoonoses (GEZ) within the Center for Epidemiology and Surveillance (EPI) but you will work half of your time at the department of Bacterial and Parasitic Diagnostics (BPD) within the Centre for Infectious diseases Research, Diagnostics and laboratory Surveillance (IDS).
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