PhD candidate ‘Circulating tumour DNA’

PhD candidate ‘Circulating tumour DNA’

Published Deadline Location
28 Dec 24 Jan Nijmegen

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Job description

We are looking for a highly motivated PhD candidate with demonstrated interest in performing translational, clinically relevant research on cancer patients. This research will primarily be performed on longitudinally collected blood samples of patients with genitourinary cancer. Will you join our team?

The unique and individual patient is always the center of care at the Radboudumc. Unique characteristics include the genetics, biology and physiology, but also the psyche, social environment and wishes of the individual. The Department of Medical Oncology aims to personalize anti-cancer treatment for its patients with cancer; we are striving to improve patient stratification for targeted therapy and immunotherapy by matching optimal treatment based on their tumour biological characteristics within the framework of multidisciplinary molecular tumour boards (MTB).

We are also attempting to further optimize early response assessment and to improve early detection of disease recurrence, in a non-invasive manner utilizing serial blood tests. For this we closely work together with the Departments of Human Genetics and Pathology.

You will work within the Department of Human Genetics on introducing state-of-the art next-generation sequencing (NGS) assays (hybrid capture-based panel and shallow whole-genome sequencing) to non-invasively assess mutations, copy number alterations and molecular signatures from the cell-free circulating tumour DNA (ctDNA). This will be done in samples collected within our biobank, in the context of a prospective clinical trial in patients with prostate cancer (PROMPT, clinicaltrails.gov number NCT04746300) and in the context of urothelial cancer patients within an Eurostars Project 'PRECISE - First multi-modal liquid biopsy IVD to predict response to immune checkpoint inhibitors in cancer'.

For the analyses of NGS, you will be working closely together with fellow PhD students in the 'Liquid Biopsy' group and bioinformatic team at the Department of Human Genetics in collaboration with your supervisors from both the Department of Medical Oncology and Department of Human Genetics.

This PhD project is in part funded by the Eurostars Fund. Within this multidisciplinary framework your thesis will focus on non-invasive predictive biomarker discovery and validation. These results will form the basis of your PhD research. The research should result in a PhD thesis.

Tasks and responsibilities
  • Test, optimize and utilize a ~60-gene NGS panel on the ctDNA from plasma samples from prospectively collected patient samples (genitourinary cancer patients).
  • Optimize bioinformatic analyses pipeline for assessment of mutations, copy number alterations, mutational signatures and ctDNA tumour content.
  • Validate clinical utility of longitudinal ctDNA assessment by correlative studies with prognosis and outcome from cancer therapy.
  • Provide support and oversee the logistics and datamanagement of patients included in the Eurostars and PROMPT program.

Specifications

Radboud University Medical Center (Radboudumc)

Requirements

We are looking for an enthusiastic PhD candidate who is keen to join the Department of Medical Oncology to help us in our mission to provide a more personalized therapy for patients with cancer. The PhD candidate can either be a MSc or a medical doctor (MD) with strong interest in performing translational cancer research.

You have a great interest in molecular cell biology, tumour genetics, next-generation sequencing platforms and immune-oncology. You also have strong motivation, initiative and ambition to perform complex data analyses and publish in high-impact journals. You are able to work both independently and interdisciplinary.

Furthermore you recognize yourself in the following profile:
  • Excellent communication skills, contributing to a pleasant working atmosphere.
  • High level of proficiency in English.
  • Ambitious.
  • Empathic and social.
  • Strong analytical behaviour.
  • Proof of excellent writing skills.
  • Excellent collaborator.

Conditions of employment

Fixed-term contract: 4 years.

The salary depends on education. Scale 10 will be offered to MSc medical graduates; those holding degrees in other disciplines will be offered scale 10A.

Working at Radboud university medical center means that you are ahead of the curve and working together on the healthcare of the future. And there is more. Our secondary terms of employment are impressive. These are fully tailored to you thanks to our Employment Conditions Selection Model. At Radboud university medical center, you will be given trust, and you will take the responsibility to handle everything together. We provide annual courses, both professional and personal.
  • In addition to your monthly salary and an annual vacation allowance of 8%, you will receive an end-of-year bonus of 8.3%.
  • If you work irregular hours, you will receive an allowance.
  • As a full-time employee (36 hours per week), you are entitled to approximately 168 vacation hours (over 23 days) per year.
  • Radboud university medical center pays 70% of the pension premium. You pay the rest of the premium with your gross salary.
  • You get a discount on health insurance as well: you can take advantage of two group health insurance plans. UMC Zorgverzekering and CZ collectief.
In addition to our terms of employment, we also offer employees various other attractive facilities, such as childcare and sports facilities. Want to learn more? Take a look at the Cao UMC.

Employer

Radboudumc

The Department of Medical Oncology is part of the Radboudumc Center for Oncology. We place emphasis on working in multidisciplinary teams to improve both patient care as well as research. The nursing department, day care and outpatient clinic are all integrated to guarantee a well streamlined process in the treatment for our patients. There is extra attention for adolescence and young adults (AYA) with cancer, but also for the elderly cancer patients.

Embedded in our academic patient care are early stage clinical (medicinal) trials, and research regarding pharmacology, pathology, genetics and radiology. There is a close relation with the Department of Human Genetics. This scientific collaboration is aimed to gain a more thorough understanding of cancer biology, and on individualizing cancer treatment through molecular characterization of tumour tissue and liquid biopsies. An important activity of the department is the translation of basic research into clinical application.

At this moment there are 14 staff members working within the Medical Oncology department (partly part-time connected at our department). There is a team of enthusiastic and involved clinical fellows, PhD students, medical researchers and students that contribute to an outstanding educational and scientific climate.

The Radboudumc aims to excel in all academic tasks and in giving the patient an important voice in the treatment team. To act together within networks and partnerships are topical issues of the Radboudumc subjects for giving shape to an optimal organization of sustainable oncology care.

Research Institutes
At the moment there are more than 1,300 PhD candidates at our medical hospital. This number includes PhD candidates on our pay roll as well as external candidates (those employed somewhere else but researching on our premises).
  • Radboud Institute for Health Sciences: ± 700
  • Radboud Institute for Molecular Life Sciences: ± 400
  • Donders Center for Medical Neurosciences: ± 200
Read what it is like to do a PhD at the Radboud University Medical Center.

Radboudumc
Radboud university medical center is a university medical center for patient care, scientific research, and education in Nijmegen. Radboud university medical center strives to be at the forefront of shaping the healthcare of the future. We do this in a person-centered and innovative way, and in close collaboration with our network. We want to have a significant impact on healthcare. We want to improve with each passing day, continuously working towards better healthcare, research, and education. And gaining a better understanding of how diseases arise and how we can prevent, treat, and cure them, day in and day out. This way, every patient always receives the best healthcare, now and in the future. Because that is why we do what we do.

Read more about our strategy and what working at Radboud university medical center means. Our colleagues would be happy to tell you about it. #weareradboudumc

Specifications

  • PhD
  • Natural sciences; Health
  • max. 36 hours per week
  • €2495—€4615 per month
  • Doctorate
  • 153025-P838697-1

Employer

Radboud University Medical Center (Radboudumc)

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Location

Geert Grooteplein-Zuid 10, 6525 GA, Nijmegen

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